XooNIps User Manual
English
English日本語
English
English日本語
  • Introduction
  • 1. Overview
    • 1. What is XooNIps ?
    • 2. Main features
      • 2.1. Flexible database construction
      • 2.2. Data classification
      • 2.3. Quality-maintenance workflow
      • 2.4. Metadata distribution
      • 2.5. Variety of accessory functions
  • 2. Start guide
    • 1. User's authority
    • 2. Navigator
  • 3. Installation of XooNIps
    • 1. Plan and design a website
      • 1.1. Describe specific purposes of the website.
      • 1.2. Decide functions of the website
      • 1.3. Select software and hardware
      • 1.4. Make a specification document
    • 2. Server structure components
      • 3. OS installation
      • 3.1. Obtain CentOS5
      • 3.2. Procedure of installation
    • 4. Customize CentOS5
      • 4.1. Create an administration account.
      • 4.2. System Update
      • 4.3. Installing the required packages
      • 4.4. Install external programs
      • 4.5. Set up iptables
      • 4.6. Make SELinux invalid
      • 4.7. Set up for Apache
      • 4.8. Setup for MySQL
      • 4.9. Set up for PHP
    • 5. Install XOOPS
      • 5.1. Set up for XOOPS
      • 5.2. Close the XOOPS installation.
    • 6. Install XooNIps
      • 6.1. Set up for XooNIps
      • 6.2. Initial setting and confirmation on XooNIps
      • 6.3. How to install item type modules:
      • 6.4. Precautions on updating XooNIps
      • 6.5. Support modules
  • 4. Site policy and maintenance
    • 1. "Site Policies"
      • 1.1. 'Site Policies' (XooNIps>>Site Policies)
      • 1.2. 'User information' (XooNIps>>Site Policies>>User Information)
      • 1.3. 'Group information' (XooNIps>>Site Policies>>Group Information)
      • 1.4. 'Item Information' (XooNIps>>Site Policies>>Item Information)
      • 1.5. 'Item Types' (XooNIps>Site Policies>Item Information>Item Types)
      • 1.6. 'Import/Export' (XooNIps>>Site Policies>>Item Information>>Import/Export)
      • 1.7. 'Item Comment' (XooNIps>>Site Policies>>Item Information>>Item Comment)
      • 1.8. 'Moderators Privileges' (XooNIps>>Site Policies>>Moderators Privileges)
      • 1.9. 'Positions' (XooNIps>>Site Policies>>Positions)
      • 1.10. 'Rankings' (XooNIps>>Site Policies>>Rankings)
    • 2. "Maintenance"
      • 2.1. 'Maintenance' (XooNIps>>Maintenance)
      • 2.2. 'User Management' (XooNIps>>Maintenance>>User Management)
      • 2.3. 'Item Management' (Maintenance>>Item Management)
      • 2.4. 'User List' (XooNIps>>Maintenance>>User List)
      • 2.5. 'Access Rankings' (XooNIps>>Maintenance>>Access Rankings)
      • 2.6. 'File Search' (XooNIps>>Maintenance>>File Search)
      • 2.7. 'OAI-PMH' (XooNIps>>Maintenance>>OAI-PMH)
  • 5. How to operate a XooNIps database website
    • 1. Guest
      • 1.1. How to search and browse the published items (information):
      • 1.2. Advanced search
      • 1.3. XooNIps Ranking
      • 1.4. Admission/registration
    • 2. Registered user
      • 2.1. Login
      • 2.2. Logout
      • 2.3. Edit private (index) trees
      • 2.4. Item management
      • 2.5. Item publication
      • 2.6. Group
      • 2.7. Item transfer
    • 3. Group administrator
      • 3.1. Manage group members:
      • 3.2. Review and certify shared items
      • 3.3. Withdraw shared items in a group index
      • 3.4. Edit group indexes
      • 3.5. Publish a group index
      • 3.6. Transfer a group administrator's authority
      • 3.7. Change the disk capacity
      • 3.8. Cancel a group
    • 4. Moderator
      • 4.1. Edit Public Index Trees
      • 4.2. Certify users
      • 4.3. Review and certify items
      • 4.4. Withdraw items in public area
      • 4.5. Create/delete a group
      • 4.6. Access log analysis
      • 4.7. Transfer the moderator's authority
    • 5. System administrator
      • 5.1. Change the site policy
      • 5.2. Switch User Accounts
      • 5.3. Export
      • 5.4. Import
      • 5.5. Harvest metadata
      • 5.6. Change the moderator
  • 6. Copyright notice
  • Appendix A
    • 1. Organizations
    • 2. XooNIps based Online Databases
  • Module Credits
  • About XOOPS CMS
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  • The Laboratory of Neuroinformatics, RIKEN BSI
  • INCF (International Neuroinformatics Coordinating Facility)
  • NIJC (J-Node)
  • J-Node portal
  1. Appendix A

1. Organizations

The Laboratory of Neuroinformatics, RIKEN BSI

http://www.ni.brain.riken.jp/

The developer of XooNIps, conducting neuroinformatics studies including: database tool development for resource sharing, tool development for data analysis and visualization, computational neuroscience in vision.

INCF (International Neuroinformatics Coordinating Facility)

http://www.incf.org/

Established via the OECD Global Science Forum, the International Neuroinformatics Coordinating Facility (INCF) facilitates worldwide cooperation of activities and infrastructures in neuroinformatics-related fields.

NIJC (J-Node)

http://nijc.brain.riken.jp/

As the host institution of the INCF Japan Node, the NIJC serves as a gateway between Japan and the world. The NIJC has eight neuroscience databases open to the public under the J-Node portal site.

J-Node portal

http://www.neuroinf.jp/`

PreviousAppendix ANext2. XooNIps based Online Databases

Last updated 6 years ago